Scaffold Ga0114880_1020575

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1020575
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3078
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F044450	Metagenome / Metatranscriptome	154	N
F053995	Metagenome / Metatranscriptome	140	N
F056549	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10205752	F056549	GGAG	VAEPYVPIADYTTYNNLLIELEVTTDSAETNADALDLAVDNTLVHKQTAENAVASKFDLFFLVGA*
Ga0114880_10205754	F024770	AGGAG	MAVSHQRVSVGTTATKLTSDYDGKDGQTINVQNPSGGVDVYLGGDGVTTTSYGYLLKADTSFSVELQDDEKLYAVVTTGTQTVNIIRQGT*
Ga0114880_10205755	F044450	N/A	MKAQILKSMIVEGRKLVAGDIVEVKGWRHAKALANNRYIKLIEEDVVEEKVAEAPKPKATKKTKEVAE*
Ga0114880_10205756	F053995	AGGAG	MALVNRLSKGEVAVGALQVGDNDTVYGIEFGTVEIDPASLNATTRGATTFTLTGAATTDIIIVNPPSDLNDDLIFCGAAVTAADTVTVYLYNPTAGSINQAAATFSYCWIDTTA*