Scaffold Ga0114880_1019590

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1019590
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3168
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062760	Metagenome	130	N
F063689	Metagenome	129	Y
F066774	Metagenome / Metatranscriptome	126	Y
F104778	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10195902	F066774	AGGA	MTQDKTMGNLETWVRQLNGELNVEEIARTKPQPITDLIAPYSVFLRAYDKVGLCALTNPRRFAKCNVEFVFDGNTRKLKDVRLINQNEA*
Ga0114880_10195904	F104778	AGGA	METKAWLIEEFNNNNELVWKMISFFEPDSLEWMRDLKGKKHNLVISELGVKNSKTINGIEKKYDSSKFVVGH*
Ga0114880_10195905	F063689	N/A	MEVLFRYIVFDDFGEPIIRFRTKHEAECYVLHRPNHKIQRLPPEPKENVFDLIKEEPPF*
Ga0114880_10195907	F062760	AGG	MKHRNWIVTLQNLPELQIYLEGLIKDGKTPQVTIKEKADKGRSLEANKFLWGRLYKSISNFSGYLPMEVHLLCGHLFLSEQKTINGVQVPYVRSTTDLTIEEFASYIQNIEVYFSNLGWSMDE*