NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114880_1006340

Scaffold Ga0114880_1006340


Overview

Basic Information
Taxon OID3300008450 Open in IMG/M
Scaffold IDGa0114880_1006340 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6133
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (33.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017988Metagenome / Metatranscriptome237Y
F020142Metagenome / Metatranscriptome225Y
F034178Metagenome / Metatranscriptome175Y
F043294Metagenome / Metatranscriptome156Y
F044369Metagenome / Metatranscriptome154Y
F056434Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0114880_100634011F034178N/AMKLGDKVISNKFPGRIFDLVWYQEGDATCAIQDERLRAVVKVSTLDLVPQE*
Ga0114880_100634013F020142N/AMRKGPQRIKIPSKKWNEKFIQGKKTWHVVHKQDGITYAIAELRPGVVGGAVERFYI*
Ga0114880_100634016F056434N/AMSKVSSKTRYEAFSEWHKWAQTRYQSMKRKKKARPDYMAYGADNEY*
Ga0114880_10063404F043294N/AMATAMAATSIVLTLVMGFLLYLEIGKMEKQILEIQEQIHFLNNEVSKLKQQAKKKYYNNQNRKQVIKG*
Ga0114880_10063405F044369GGAMSKIETVLYKAFEKGIYNETMSIAQDIKEENPKMEVADRYELAYERAKKSLLKSSPPLNP
Ga0114880_10063409F017988N/AMKFLELTGFGNKYKHLISLRSIADISFEPTYTHISLNNGNGVNVIENEKEITEMIRYQNGDIVGVEYLKNLQAQIDAYYEMEADRFAVGGDDELPF*
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