Basic Information | |
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Taxon OID | 3300008450 Open in IMG/M |
Scaffold ID | Ga0114880_1004201 Open in IMG/M |
Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7788 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (10.53%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Western Lake Erie | |||||||
Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F023350 | Metagenome / Metatranscriptome | 210 | N |
F041777 | Metagenome | 159 | Y |
F045753 | Metagenome / Metatranscriptome | 152 | Y |
F046371 | Metagenome / Metatranscriptome | 151 | N |
F049635 | Metagenome / Metatranscriptome | 146 | N |
F071250 | Metagenome | 122 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114880_100420110 | F041777 | N/A | MKKTLLFIALLFGAMLIAGTIDESTRQLEQTPNTTNK* |
Ga0114880_100420113 | F045753 | N/A | MYCPKITYCFSDEDISALNERIKAIANNYNDDQTGWFEVNEEQHLTFIDEQDNMYSINLRGRFHKNDDPDFELDYVTLEKDGVSFSFDLDIFDDHL* |
Ga0114880_100420115 | F071250 | N/A | MKKLVTLEKRVENLLKKYKFLRNNNKALCVKVWEQQFDERKDITSNFFAMYELGKYVSADNITRIARLVKQHNPELRGTNHEDNKKKEQLIKPLLKR* |
Ga0114880_100420116 | F049635 | N/A | MNKAIYKTPFGRLVKSQFKTMNNFKTVLRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND* |
Ga0114880_10042012 | F046371 | N/A | MSENKLNFLRSQIAMFHPEWTKEQIEMEAIRIHNEANTIDDDDEGCLYCGS* |
Ga0114880_10042017 | F023350 | N/A | VTLDQYIEGNYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYKQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYIFEGFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKK* |
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