Scaffold Ga0114880_1003904

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1003904
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8120
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F002356	Metagenome / Metatranscriptome	567	N
F020667	Metagenome	222	Y
F024098	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10039042	F000557	AGGA	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYKRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFMGWFPKKYDGASHQERAELLKAHAKIGDVWGVVSFFC*
Ga0114880_10039045	F024098	N/A	MLFKVSGSLTSATNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVQKVVETLVAPTKPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNVAFAGNLEQLELADWSGSVYFPSDALQGGENALTTTCIPISSPANALNVVYSDSYGWLCVGAGYSGAVVSAQVVYTNSAGTSIRNFYVPRPLSVSGSIHRFGAGPMNLKALTSAQCSDGQAGSFNFPTAEGAGYYIQFVDVTDAGYTATWFRIGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKIWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELNGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL*
Ga0114880_10039046	F020667	N/A	MSVTLIAYPLNDSNVEVPYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVMQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGAASSGYVYGVIDSGGFTDILNQGGGWFQAPWWSLGPSIYVKKMVDLIFTEAGFRYSSNFFNSSLFNKLVIPYASGLRPINLSGSNIFAQSTGITTFAEDVDINLPFSKDTPAPFYDNQGYWVASSSIFVAPSVPTRWNIDVTLTVSGAATPSYFEANMSVRNLTDSTDNAVITNLKGQTGRQFVVRFQNVTIPANTTANIGFIVTYDLFNNNFAIPSGATVQWTCLENPQSLGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDSQDPKLLYIEPWKDFYSSGVVDWSQKSDENAEQNITNGDPNAYTNVIFKYKDMDDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIEGTLASGTVKALQTGYRLAQYNLIEGQTEWAYQYGVSGNTALSVGILRMPFVSHIDNPYAPSVDLAFGQPRLVYYNAVNASGSPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLADFAATSTTPIANDPSALFNGPIDPDPVDPGYEPPVNPELPSEG*
Ga0114880_10039049	F002356	N/A	MNLKSAIETLRTELRKFTTQKQAFADYKLVDGTVIRVDGDLVAGTPVYVITEDETLPAPDGEHEVEGVGVVKTEGGKITEVVVAEAPAPAEEVEVAAEITPEVAGEVVSEIAEGYPLVDPAMVEEIVKKHLVSIMEELKAAYTEMGKMKEKMASFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRKAATQQNFNNLAQAIQNLKKSN*