NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114880_1003904

Scaffold Ga0114880_1003904


Overview

Basic Information
Taxon OID3300008450 Open in IMG/M
Scaffold IDGa0114880_1003904 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8120
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F002356Metagenome / Metatranscriptome567N
F020667Metagenome222Y
F024098Metagenome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0114880_10039042F000557AGGAMKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYKRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFMGWFPKKYDGASHQERAELLKAHAKIGDVWGVVSFFC*
Ga0114880_10039045F024098N/AMLFKVSGSLTSATNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVQKVVETLVAPTKPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNVAFAGNLEQLELADWSGSVYFPSDALQGGENALTTTCIPISSPANALNVVYSDSYGWLCVGAGYSGAVVSAQVVYTNSAGTSIRNFYVPRPLSVSGSIHRFGAGPMNLKALTSAQCSDGQAGSFNFPTAEGAGYYIQFVDVTDAGYTATWFRIGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKIWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELNGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL*
Ga0114880_10039046F020667N/AMSVTLIAYPLNDSNVEVPYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVMQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGAASSGYVYGVIDSGGFTDILNQGGGWFQAPWWSLGPSIYVKKMVDLIFTEAGFRYSSNFFNSSLFNKLVIPYASGLRPINLSGSNIFAQSTGITTFAEDVDINLPFSKDTPAPFYDNQGYWVASSSIFVAPSVPTRWNIDVTLTVSGAATPSYFEANMSVRNLTDSTDNAVITNLKGQTGRQFVVRFQNVTIPANTTANIGFIVTYDLFNNNFAIPSGATVQWTCLENPQSLGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDSQDPKLLYIEPWKDFYSSGVVDWSQKSDENAEQNITNGDPNAYTNVIFKYKDMDDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIEGTLASGTVKALQTGYRLAQYNLIEGQTEWAYQYGVSGNTALSVGILRMPFVSHIDNPYAPSVDLAFGQPRLVYYNAVNASGSPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLADFAATSTTPIANDPSALFNGPIDPDPVDPGYEPPVNPELPSEG*
Ga0114880_10039049F002356N/AMNLKSAIETLRTELRKFTTQKQAFADYKLVDGTVIRVDGDLVAGTPVYVITEDETLPAPDGEHEVEGVGVVKTEGGKITEVVVAEAPAPAEEVEVAAEITPEVAGEVVSEIAEGYPLVDPAMVEEIVKKHLVSIMEELKAAYTEMGKMKEKMASFASQMETMTDIVEKVAELPSEAPKPTASAIVEQRKAATQQNFNNLAQAIQNLKKSN*

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