NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114880_1001191

Scaffold Ga0114880_1001191


Overview

Basic Information
Taxon OID3300008450 Open in IMG/M
Scaffold IDGa0114880_1001191 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15647
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (12.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009003Metagenome / Metatranscriptome324Y
F011136Metagenome / Metatranscriptome294Y
F027408Metagenome194N
F036096Metagenome170Y
F073090Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0114880_100119111F009003N/AMKPKDKAWQLYSNYFDIIENGKQEGNLAEVHIKSVNAALHCVDEALVNAPSEIMQDFEGTGEFYSVKAYYHHVKNEILKLNSFNNTK*
Ga0114880_100119122F027408N/AMKDYDKQREIELLRKLFVLTAKRSMRPSMTDNVAMRLIFEELHLLTDKNEYKL*
Ga0114880_100119131F011136N/ALLDSVSREISRHYKSWLAKANGLTHDKNRASDLVHEVITRLLDRPQQDVVDIVCGGKVRQYVDRALWLSWHSNRSDYATRYRKYYELITDKQVDDAKQDETWVGHFIDGEYLYSAIGRLNEHDAILLRLYSKPDFDYKKLSDETGIPNAYLRLSIHRAIKRIRKYVQLQRASSHPTGEA*
Ga0114880_10011915F073090N/AMMYWYNTSHEIDSLYQLEKLKVHYYAKITGIQANSYETLATIYENKQAIEKAIGEEKEMQIKDLKKRNKRLIIHNIGLSVGLTALAVSSFYLIVL*
Ga0114880_10011919F036096N/AMTATLTFDLHEDQHAFDCAINGIKYFDMIDEFRQHLRSLEKYQDLTEEQYELVGKMREWLATELVEAGISDKF*
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