NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114880_1000975

Scaffold Ga0114880_1000975


Overview

Basic Information
Taxon OID3300008450 Open in IMG/M
Scaffold IDGa0114880_1000975 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17571
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (56.67%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Associated Families14

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F005702Metagenome392Y
F005846Metagenome388Y
F006138Metagenome / Metatranscriptome380Y
F008741Metagenome328Y
F009142Metagenome322Y
F011284Metagenome292N
F012113Metagenome / Metatranscriptome283Y
F012433Metagenome / Metatranscriptome280N
F023059Metagenome211Y
F026543Metagenome197N
F045612Metagenome152Y
F074559Metagenome119N
F093768Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0114880_100097510F006138GAGGMAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYFNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTVRIDSITLNKSNDAFVTLDISATGYPNVS*
Ga0114880_100097511F026543N/AMTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLRTSVPVRIVQTKGGQTLLISENATQEQRKAILKHI*
Ga0114880_100097517F093768GAGMAENPSPPKLPGKSQPLRTIRPTPDGVGISADYINSIIQRIEDLVQVAQSQKPIAGNNIQINFTAQGAVINATE*
Ga0114880_10009752F008741GAGMKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLPQYHSVFDLVSYVKAGSKGDVLDLEIWPNKYEAYRKSRRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPESYNLVAAFGISQGFYRNPLDIITKARTDMGKDNFYVMTPPEIQIQGLSTYTASSVSEMAKAIRGAKDFWAINSTPIVLASVVRRGKPTGFFPQKNEWETDNIFDFEGMFRMD*
Ga0114880_100097520F012113N/AMEQILTFVQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSKK*
Ga0114880_100097521F023059AGAAGMFEAVIASFAGVVGIVFWWLKNRAKTRRERDDDEIAYNRKLRDSEVDSWIHRN*
Ga0114880_100097523F011284N/AMTSIGGVVDSKFTKKHELHMTTLQMAAVESMEKKYKRGVEEHGGTKLWEMPAVRLVENAIEEATDQLTYLLTLRSQMHIVMELARDGCTDETLTNPRARECCTLIYTTLTGQSNPL*
Ga0114880_100097525F074559N/AMNAKNPWQKLLSEHIKDKFAPPQPAGYYTREQVSKLWQKSMNTTSRMLNQMLEQKKVEMKRHPFIVARKDHRVIRNLKIFKILPIKHPHK*
Ga0114880_100097527F005846N/AMTSFPLPARPVGSAVPALHDEFSEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPVNPKPYAERMKEIEHIEAVTFDLQPNKLLRFVRLAHNKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPSYCSPSWQKQRIRW*
Ga0114880_100097528F005702GAGGVIIFLVVFFGLLILQGVRIFAKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKEPKQPELVLPSKNWVGRN*
Ga0114880_10009753F005584AGGAGGMAGTIDTSYFSTDLQFMIADMFQTVTGLASSAVSASVTDLATASELEIGGEVFRVTQSVVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT*
Ga0114880_10009755F009142N/AMNNSVQINVEDALDNLLANIPNLNVYKTNRIGAKLFPFATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKISQEAFDSEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLQISLICTPSELDDGLRYLNFYQKQNSMYVAVI*
Ga0114880_10009758F045612GAGMTHQYTYEDFMSSLKWLEAEGYIEKFYDNNGDLCVRVCEGAEDCEV*
Ga0114880_10009759F012433GAGGMSADQVADLRERLARIEERQTNIILILERHTSELAQWSSKINSKVDTLERDSHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR*

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