Scaffold Ga0114880_1000975

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1000975
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17571
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (56.67%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F012433	Metagenome / Metatranscriptome	280	N
F023059	Metagenome	211	Y
F026543	Metagenome	197	N
F045612	Metagenome	152	Y
F074559	Metagenome	119	N
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100097510	F006138	GAGG	MAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYFNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTVRIDSITLNKSNDAFVTLDISATGYPNVS*
Ga0114880_100097511	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLRTSVPVRIVQTKGGQTLLISENATQEQRKAILKHI*
Ga0114880_100097517	F093768	GAG	MAENPSPPKLPGKSQPLRTIRPTPDGVGISADYINSIIQRIEDLVQVAQSQKPIAGNNIQINFTAQGAVINATE*
Ga0114880_10009752	F008741	GAG	MKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLPQYHSVFDLVSYVKAGSKGDVLDLEIWPNKYEAYRKSRRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPESYNLVAAFGISQGFYRNPLDIITKARTDMGKDNFYVMTPPEIQIQGLSTYTASSVSEMAKAIRGAKDFWAINSTPIVLASVVRRGKPTGFFPQKNEWETDNIFDFEGMFRMD*
Ga0114880_100097520	F012113	N/A	MEQILTFVQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSKK*
Ga0114880_100097521	F023059	AGAAG	MFEAVIASFAGVVGIVFWWLKNRAKTRRERDDDEIAYNRKLRDSEVDSWIHRN*
Ga0114880_100097523	F011284	N/A	MTSIGGVVDSKFTKKHELHMTTLQMAAVESMEKKYKRGVEEHGGTKLWEMPAVRLVENAIEEATDQLTYLLTLRSQMHIVMELARDGCTDETLTNPRARECCTLIYTTLTGQSNPL*
Ga0114880_100097525	F074559	N/A	MNAKNPWQKLLSEHIKDKFAPPQPAGYYTREQVSKLWQKSMNTTSRMLNQMLEQKKVEMKRHPFIVARKDHRVIRNLKIFKILPIKHPHK*
Ga0114880_100097527	F005846	N/A	MTSFPLPARPVGSAVPALHDEFSEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPVNPKPYAERMKEIEHIEAVTFDLQPNKLLRFVRLAHNKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPSYCSPSWQKQRIRW*
Ga0114880_100097528	F005702	GAGG	VIIFLVVFFGLLILQGVRIFAKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKEPKQPELVLPSKNWVGRN*
Ga0114880_10009753	F005584	AGGAGG	MAGTIDTSYFSTDLQFMIADMFQTVTGLASSAVSASVTDLATASELEIGGEVFRVTQSVVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT*
Ga0114880_10009755	F009142	N/A	MNNSVQINVEDALDNLLANIPNLNVYKTNRIGAKLFPFATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKISQEAFDSEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLQISLICTPSELDDGLRYLNFYQKQNSMYVAVI*
Ga0114880_10009758	F045612	GAG	MTHQYTYEDFMSSLKWLEAEGYIEKFYDNNGDLCVRVCEGAEDCEV*
Ga0114880_10009759	F012433	GAGG	MSADQVADLRERLARIEERQTNIILILERHTSELAQWSSKINSKVDTLERDSHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR*