Scaffold Ga0114880_1000188

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1000188
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37184
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (86.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014495	Metagenome / Metatranscriptome	262	Y
F029429	Metagenome / Metatranscriptome	188	Y
F063699	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100018818	F063699	N/A	MTSVEQTIANFFKLAKSHKIRAYQIANEAGITRVTLSNWKSNRTEPQLGIWLAANDALDRLVQNKLNA*
Ga0114880_100018830	F029429	GAG	MTPEKLKLARNYMGYSINEMADALRLSPDNGGTTIRKMEAGKVRITGPIMVAVDAMLKGYDPFNYDEDEDDQF*
Ga0114880_10001888	F014495	AGGTGG	MINPAQAAPVGMKNRVSSDSAWPLRGLDGKTWAERRAEREKEQRK*