Scaffold Ga0114876_1064105

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1064105
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1593
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054041	Metagenome / Metatranscriptome	140	Y
F058151	Metagenome / Metatranscriptome	135	Y
F074407	Metagenome / Metatranscriptome	119	Y
F099316	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10641053	F074407	N/A	MNKKIKDLAIEAGLYVDLNGEPWPRNMTGEDIEAFYEKFAYLLIDECAKKVDKVRRQGGWYYGEIIRKEFGFYDKKNP*
Ga0114876_10641054	F099316	AGGA	MWRIRKIGDENGYIVRNKELANQLLNQFNLKGDWEMVEINEYELGDPMEQ*
Ga0114876_10641055	F058151	GGA	MMRRKREIMELENKVTLSTLVDNVPTDVSGKWVKKEDLYPFASAVADHVLSEVEDKLNDSNL*
Ga0114876_10641056	F054041	GAGG	MTVIFTCGHKAKDDEDGWTISTKAYTRENNRAVDYRTVCNNCYQVYENEDLVLFGEADVAKWLDGE*