Scaffold Ga0114876_1057420

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1057420
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1721
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004667	Metagenome	428	Y
F017297	Metagenome	241	Y
F048999	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10574201	F004667	AGG	MARPPKVDTVQFRRKLDNPKLQILLSAGQGNISQGFENLLSLYQHLHGIGYRTDSPLECIGLVTNLAESKRDSPNHVNQ*
Ga0114876_10574202	F017297	AGG	MKITEQKNGNYTTFERTFPSGYYIVKLYKRGELADKIMTDTYQAARDYLRSFNLIAKNG*
Ga0114876_10574206	F048999	AGG	MLTITLHQKTDNDGWQSIKSLPIDNAQWGEIDRSWIDTLMQTGSMVITIGHTMY