Basic Information | |
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Taxon OID | 3300008448 Open in IMG/M |
Scaffold ID | Ga0114876_1050038 Open in IMG/M |
Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1893 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Western Lake Erie | |||||||
Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012570 | Metagenome | 279 | Y |
F018535 | Metagenome / Metatranscriptome | 234 | Y |
F019121 | Metagenome | 231 | Y |
F041172 | Metagenome | 160 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114876_10500382 | F018535 | GAGG | MKTQINTSGLQWPQHLWPYTYTHGDTELLCFVDWEPADRSVGMAAGAWLIHAYAGGVDVVDLLKDTIIKDIEEEAACSLSLD* |
Ga0114876_10500383 | F012570 | GGAG | MQTVNIDGTTYRVKFDRDPIKLAKAARKPYKQKKHKDIRKFPTWTPTVSTADYIRRFDALNFLQSVNYTGASADTTAQYDPTIPLLEEIAE* |
Ga0114876_10500384 | F041172 | GGAGG | MAKLKTALLRAQEIADIIGANESLLWRARDALSDAINNPEPDEGLASAERALALINTYLLETELCKR* |
Ga0114876_10500385 | F019121 | GGAG | MAYTLKRAINGLSLDDIKRIYDQNPNMTLRELSNLTGLAVPFLKKILLEG* |
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