Scaffold Ga0114876_1050038

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1050038
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1893
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F018535	Metagenome / Metatranscriptome	234	Y
F019121	Metagenome	231	Y
F041172	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10500382	F018535	GAGG	MKTQINTSGLQWPQHLWPYTYTHGDTELLCFVDWEPADRSVGMAAGAWLIHAYAGGVDVVDLLKDTIIKDIEEEAACSLSLD*
Ga0114876_10500383	F012570	GGAG	MQTVNIDGTTYRVKFDRDPIKLAKAARKPYKQKKHKDIRKFPTWTPTVSTADYIRRFDALNFLQSVNYTGASADTTAQYDPTIPLLEEIAE*
Ga0114876_10500384	F041172	GGAGG	MAKLKTALLRAQEIADIIGANESLLWRARDALSDAINNPEPDEGLASAERALALINTYLLETELCKR*
Ga0114876_10500385	F019121	GGAG	MAYTLKRAINGLSLDDIKRIYDQNPNMTLRELSNLTGLAVPFLKKILLEG*