Scaffold Ga0114876_1045409

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1045409
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2024
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020680	Metagenome / Metatranscriptome	222	Y
F090092	Metagenome / Metatranscriptome	108	Y
F091428	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10454091	F091428	N/A	GRNRKMGITLKMRREMVQVERDVMKGLREDLRKIRAAMNQSRLNIKMHQEVLVEERKLKRIVKQEERTLRLAKRNEKRFAKIAAMEAKLAALKAAA*
Ga0114876_10454093	F020680	GGAGG	MTTAIFLSTASASDIKTLVTTGAVTPADAIARVDAVLTRKTLTDGKKARWTRLREWLVDEQIKFATTPTHG*
Ga0114876_10454095	F090092	GAGG	MKKIEVLFTLMQDGKPVPVEKMMKTLNVQQGSIMCLISALRNDFGGDVVTERDGRKVLSYQLTNADKVKIPTKVAKVAKPKAAKVSVVKTKTVVNRKQKAVVTDDAIPTLEVEEVSDADLESLKAELGLSGSYSE*