Scaffold Ga0114876_1038098

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1038098
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2279
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031764	Metagenome / Metatranscriptome	181	Y
F034567	Metagenome / Metatranscriptome	174	Y
F058818	Metagenome / Metatranscriptome	134	N
F066775	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10380981	F031764	N/A	MQKQIQETINKVSTSFPSLFSREDVIKLLADLNAEMQDEDPKPEINKDVLLTTFRQMLSEKDWDNVADKDQFELSIGYDNKIEIDRIAIDEDFLISEVVDALEALWDVLEGVED*
Ga0114876_10380983	F034567	GGAG	LINLFNYYDYINHYGNRMFAIAGIKAMPARYSSILFTGSYDECMERLDPKGLEGSVEDIQKRVAFRR*
Ga0114876_10380984	F058818	N/A	MIKELKKLQNILHDMAAELYGDLWIMNDKFWNSPTERQLREVTMQLIDLGVTIDPSDEQREAAKIIGKKFGFQLPPED*
Ga0114876_10380985	F066775	N/A	MTKNESLEIIKAALIEKRDAVELACEALGKEAKEEKKAIFEELFAEELLSYADVAVEVGYSGIVFKVGHKEIGSINERSYWRDEDKDKKYYFNTYSTMCEDEFEFKRLIFNGKIALRMWFDMDSIREAFMIPFSKKELYDALSQDLNILSGEIKQKEYQMHEVRRQDIIDKLNGEGIEWTSNKCFEFNRQWTSYLVKKVKIVKATKSGKTVDLEVTYALYDWSYDDEGNSMRVEREDRIATHEGIKMEYVMGNFSDL