Basic Information | |
---|---|
Taxon OID | 3300008448 Open in IMG/M |
Scaffold ID | Ga0114876_1031769 Open in IMG/M |
Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2572 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Western Lake Erie | |||||||
Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012570 | Metagenome | 279 | Y |
F018535 | Metagenome / Metatranscriptome | 234 | Y |
F028501 | Metagenome / Metatranscriptome | 191 | Y |
F041172 | Metagenome | 160 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114876_10317695 | F028501 | GGAG | MRTITAKYTGTCAATGARILAGDLIQWSKGRAVLLERRRTAVDTITLYGEHGPRTYYQNARGRCIDAPCCGCCTI* |
Ga0114876_10317696 | F041172 | GGAGG | MAKLKTALLRAQETAGFIGSNESLLWKARDALSDAINNPEPDEGLASAEFALQAINTYLMETELCKQ* |
Ga0114876_10317697 | F012570 | GGAG | MQTVKIDGTTYRVKFDRDPIELAKAARKPWKPKKPKDIRKFPTWTPAVSTADYIRRFDALNFLQSVNYTGASADTAAQYDPTIPLLEEIAE* |
Ga0114876_10317698 | F018535 | GAGG | MKTQTNIAGLQWPQHLWPYTYTHGDTELLCFVDWEPADRSVGWTGGAWLIHAYAGGVDVVDLLKDHIIKDIEQAAAEALLEGPTC* |
⦗Top⦘ |