Scaffold Ga0114876_1015512

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1015512
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4124
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003863	Metagenome	464	Y
F031792	Metagenome	181	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_101551214	F086805	GAGG	MRELSKRGNLVAGIAIGLLVAGLIWVSGHVWYVPGEGYCIGTMLECYGPDFH*
Ga0114876_10155125	F003863	GGAGG	MESKQVSGRQVVHYRNYRRARDRALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWSINPDARLTVGIHTRANGTPAFGDPADAGADEGNDGGEA*
Ga0114876_10155127	F000821	GGAG	MNEEYLAAKANLCLNQAEIDLKQEEIARAIKNLERANSALSRLFGLREEGENE*
Ga0114876_10155128	F031792	GGAG	MSYEPELNDPVFYEVEEEVEPIKCFRCSDELDEEEIVWADVEGQIVKEGNDIAWCVSCLPSEGESNE*