Scaffold Ga0114876_1006256

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1006256
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7355
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001807	Metagenome / Metatranscriptome	631	Y
F020342	Metagenome / Metatranscriptome	224	Y
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10062562	F103180	N/A	MIGFSIEFKRWYFVLRGPKGRVYLATGFAKRMLVMTPTGTYTLDQCIDTWASEETVKMKNFLTR*
Ga0114876_10062563	F001807	N/A	MTVLAIEDTYFTQTHVTVTAVVDDMRLLYRATRFDPEEWAPALCQTTIELDPEEPIPLDEDGFCAYLDYLDPQWQLVDTSDE*
Ga0114876_10062564	F020342	N/A	MSATLDYLNMFDRINLADCAKRRASANVVDETRFNGEYDTARLWMKYRLIKTTQHSYVEDN*
Ga0114876_10062565	F001120	GAG	MTKKSPISFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNANPNGVKGSVSIPGTGLSIPNLKII*