Scaffold Ga0114876_1006018

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1006018
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7544
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F027490	Metagenome / Metatranscriptome	194	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100601810	F004695	AGGA	MLDKQNVIVESLESPSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMISPVRSPITQYKEVEGTRDQLRVFETLAGEKGLTAKRQNMRKVDVNLEGAMVEAMAQDDTGMMQEPTGDELQDALRNNTIYRAKYKLTGYETSVRVKHVGQHYFVCNPTIPTIQDQDFVGFYDPMTIHECKSQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMSRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDYNIQQLAGTCLKGAPFMDALSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTFEEAVKIMQAQAAKGPSVEQQETQSKVALNNAKAEESGSVTALNIKKAEDIDMDNMFEALAAKRGKHSAVQVD*
Ga0114876_100601811	F003521	AGGA	MKSLVSNIREYLNRRTKVVDSHKEANVNRKTLVIENGESAKKLLRNDDFALLFNLYRFYLLEMLEESRDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK
Ga0114876_10060182	F001915	N/A	LFGWDVKPAFKDVDARFFLAFHLALPKTKLSSNNLTRNSMEWTLAHPLHDVEDIVELADSIFGHEADGILTRDKAVFRKHVTVATTVQVFDKSKEFIAVCRGDKLVKTFIGDAAEDTLLAYCWFDRGGYTTYANEEISNAKFHHVDLGLSPRLRVRLINEMIDQHILWANRWGIPVVCSTSIRAEHDGFMKIHKKRGFTVNGSYGWLRTEDGMKRLQDSHKFEKG*
Ga0114876_10060184	F098944	AGG	MFNEIRPEGSTVTSEEIKQRARDYAKVRRAEKKAMKLATGKIEPKEAIETVPVVDEFDMSAFQPRSQKMAGRPKSIVNKVTEYGALFNKLNDERTAKGLPPLKTAMEVLIDAMQSDQLDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFMESLRKV*
Ga0114876_10060186	F027490	GAG	MSYGKVINGGASMRKGVTKGINDKIAGHSGENARREQVASAVRSAYTVNTVSSQHTNGVKNSGKFTKPSNTSKNYAL*
Ga0114876_10060187	F001059	AGGA	MATYDIDSLKEDLPTAKELAQFVYDKTGVSLDLLGKKKEEQYIVAKNALEGKKVPSEYATDDNPYVDKKDQIPCDPVRPLPKRSMDLPDEGSMVHFFGATNMPHPLDPQSDKKVGINFKKYDNGCITYQVMGPLEQVPVGQKVNKYGQTIPEKYSWIDPRTEELLMRRPDGTYTEKGRGLYTYLVGEKGGGVWSLIDRNITSISQKNIADPWA*