Scaffold Ga0114876_1004168

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1004168
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9496
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067450	Metagenome	125	N
F075991	Metagenome	118	N
F082207	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10041685	F067450	N/A	MIWLLILIPIAACAIVFLHYCIGSPIQGEYYTGRIFSFYGAFISKQYLHFEEKEKQRVWAKYNEWKQTRDKYLNEDLQNKTAEECTDVYNEYLDEVNKMHSNVENNMKNNPWSMAGACPICFGTWVSIFTFTFFVIFVPLPWWYIFIGTPTAVILSRYIKIK*
Ga0114876_10041686	F082207	N/A	VNKLFPNQDLSQYYDRKIGVGMGDIQRMIPNHLSVWAVYCNHRKCLNFDLIKQLPKTEHYIPVFLFKSIMSDRYRLHCELAMWDRDNIIVDDIEHDADDYFEHHKIVQVAALIKFETHEILIARK*
Ga0114876_10041687	F075991	N/A	MTNDEKKAALIAKVGEQRVNELTQYIWLLLGALNTAQFAIAQFEPRKMKFEMKKRFNDLNNAIKFFVNNFEKAITPNEKDILETNTFDNIGIVAELIAMTTTLPESQQEWYLNECKKLLFSAYNKSINELRSESGE*