Scaffold Ga0114876_1002059

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1002059
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14438
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F015330	Metagenome / Metatranscriptome	255	Y
F027490	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10020591	F001915	AGG	MWSLAHPLYDIDDMVEMSDSIYGAEIDGVLTRDRAVFRHRLTVATTEQIFNKGREFIAVRRDLEDKLLGFCWFDRGGYTTYSNEEISNAKFHHLDLRLPLRTRVRMINEMIDQHILWAHTWGVPVVCSTSIRGEHDGFMKIHQKRGFTVNGSYAWIRTEKGIACLK*
Ga0114876_100205911	F004695	GAGG	MLDKQNIVVESLESPPGNKGIEYKVAHEAYLKMVDYLRLTQAKNTLNRMTDYHYLNIPVSNSTEPIRGIDYIAPVVTPGIDYSTAVITKGLMPDGEVNFEFQKFNEADVGSMQAADMVKYFINSKNDAYQIIRDWTQDALLHKNGIVMISPVREPITQYKEVEGTKDQLRSFEIMAADKGLTTKRQQMRRIDVNLEGVMQETMMPDETGASVDMEDSIKANTVYRAKYKMTGYSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYQPMTIHEAKQQYPYIELESFAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRFSRVVMLTTCWMRRDVDGDGEEETVEICFSGSYILYIKEVDFIPLASMCPKPIVGNFFGYSQGERLVPLQEYKTAINRAEIAFALQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDPGKHVFEFAPMQGNLAYIQDAMDRFDADKMAMLGMTNPNDTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMIKNCAIGLKDAIYIVWKTMIQYSDDYNIQQLANACMEGQDFLDAKSMENYDFIDRRMINIDMALGFLSEENRLTRQQLIIQAQTAFAQALTQMSPEVPELFAKLRRPYEDTLYALGVKHCDAYLPTFDEAAKIVQAKAAQGPSPEQQETQSKVDLNKSKVEETAAKTALLYKQAEDIDMDNMFEGIAAKRGKLSAVQID*
Ga0114876_100205912	F003521	N/A	MAMNSIVTKIREHFNRRTKGIDAQKGGNPEQRTLVIQNGEAASKLLRSEDFALMFNLYRFDMLSRLEDSKDDSERIENAYYVAGVRDFITFVEKSEFLAKVANKNVETLTKKE*
Ga0114876_100205915	F000857	AGGAG	MELNFKDEDVKVNEDYYLKGNLESGIEGVLRKNDQLFNEVKSGTWSQTFQTANLNYKVGAQDGARYVQYEQKNIEAVKQFCKERREFHAIHGTDNPFFAGTAHMMQLPKCFAHEISSKWFNNRPWELIKQEKEDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK*
Ga0114876_10020592	F015330	AGG	MFEMRPEGSKVTDFRKNKGGRPKSIVNKVTEYGAHFNKLNEERLSMGLPPLKTAMDVLIEAMQSDELDIKEKSRIAEKLATFESSRAPIISIEHVQNITRDEEVDADQALKDFMESLKKV
Ga0114876_10020595	F027490	GAGG	MYGKVISGGAAMRKGLTKGINDKLKGHAAENERRQTVATAVENAYKVLTVSSQHTNNVRGGKFTKPSVPSKV*
Ga0114876_10020598	F001059	AGGA	MATYDIEALKADLPTAKELAQFVYDKTQIALDLVGKPKEDQYHAARNALEGKKVPSEFLTDENPYVDRRELIPEDELRIMPARSEDLPSEDSQVHYFGATNMPHPDDPQSDKKVAIDFKKYENGVITFQIVAPVEKVAVGSRLNKYGQVQPEKYTWLDPRTPETVLRRADGTLTKEGRGLYTYCVGEKGSGIWPLIDKEVVAIAQKNIANPWA*