Basic Information | |
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Taxon OID | 3300008448 Open in IMG/M |
Scaffold ID | Ga0114876_1000891 Open in IMG/M |
Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22811 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (76.19%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Western Lake Erie | |||||||
Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F046202 | Metagenome | 151 | Y |
F078231 | Metagenome | 116 | Y |
F093271 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114876_100089120 | F046202 | GGAGG | MFDSFGDFFWTFMAMSGFMFWICLVIFVGMVIKRNRAKRRMFYE* |
Ga0114876_100089121 | F078231 | AGG | MKTEPDLIDIYAMFALMGLMQKPVKGKSKIDIAYEAFEQAQAMVEVREDFVNKRGD* |
Ga0114876_100089125 | F093271 | GGAGG | MRRKKVKERTNIVTVVSFGKSSRCASKIAIAHTVGSMVTLMTLGSVTRDGTNFTPSHALRLMLESNGQKVTEVTQENGNEL* |
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