Scaffold Ga0114876_1000855

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1000855
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23305
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F026827	Metagenome / Metatranscriptome	196	Y
F030356	Metagenome	185	Y
F049577	Metagenome	146	Y
F079653	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100085512	F026827	AGGA	MSTNPMSKPINQKRGPTTGNVATGSKRADFMKAKSATNSERATIANMITGALEMRGRGQAGTTNPALEGLHEKTGKAANPTANGSRLPAKYKK*
Ga0114876_100085515	F012328	AGGA	MVKKNLTPPSTANVENPWDDKAPDQDITADEIMEVAEQVAATAPKSLSNAEYDMEGLMTDFPTAKELERFVFDETGVVLNLKGRANKLKYQVAMDVLNGLEIDPKFIGGDNPYIDRTELVPVEELKPVPPRDKTLPDPREMQNIFVSNQIPHTDFEYRMQDKKVSVYFRKYKSGEISYEIVGPIDQRPHGIKLDKYGRERPEIIKWVDPRSGEQTVVRSDGTLTPQGRKLRALMQSFKVNTSNQWDTWIDREFITLGDNVMTNVWDLDK*
Ga0114876_100085516	F049577	GGA	MSDVKKAIIDQAQQQRMVKDTLILQKVNKAHREAFTYRFPVACEHMMRLTQERLQAMLTNKPTDLADPETWISTAQEIRDLSEALYYLSLISKEYPIVKEE*
Ga0114876_100085518	F079653	GGA	MTQTIDKKYICAIEENTMILCEKHAQAFEAAATVAKTPHTIIEMEDEDAIDVKCHACDLQDELTRPRIILPN*
Ga0114876_100085520	F030356	AGGA	MLDIKHIPVQDINQNVKQNATFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVIAKGLMPNGTINFEFVADGEYDEVAARQATDMVSKVVNQMNDPHFILERWVMDAAMHKNGMMMIKPVREQITRYVETEGTLEQLKAFELQAAESGLTTLRQGKRKINVNMQAVMAEMQQLLGEQQREFAGEMLDQHIANLREAPEETTMESMAAESAEMMAGNLETQEDIINDAIRRNTIYKAKYKVTGYMLNIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEATELYPDIKDNLEAFEQFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNKYDIDGDGELELIELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYATSAARAEIQLGLLTATPRIGVKPDRLDFEMLQDGEAAIFILDSKFDPQKDIYQIPPPSGNLNFLETSMQRIQQDTMAMVGMTTPQDVFNPEVMAPGNSGVKLQMALTPNQIIQDNTVRNSAEGLKEALYLVWRTLIQFGDDYGVKKLAASCHPDKQPEFLDYKAWDEMTDLCDRKQIHLELAVGMMSEENQLGRLQLIQKAQTGLYQAIQGMVANGTMTPEIYKKVKKPYEDTLYVLGVKDCNVYLPSDEEVAKMIKQAQEAGKNKQPSPEDQQKLASAGLDAAKTKQIMAEIEGTDPETQLNYMSIATGHAQDYGH*
Ga0114876_100085522	F015856	AGG	MINEDVVSAYNSRLTVDLSQPSKLTTSQKDQVRHYGSQAEALLKNRDLAMFVHHFKFTIADELSNIRSHTAEDNAQRVALSHQLAGIDSFVNSLKRAVYLKNRIGNAEAPDA*
Ga0114876_100085525	F001299	N/A	MTDYNKPEYLDDKDPEKNWDYYRQDHGGMITNHNGVADKLLTNDNLYRNMKGDWKRTESNKSGNIIITTGREDGKFYIRREQQNIEAIKQGVRNYRAAAEAGVPDPMAPIGDDGKLSFKWMDLPNVIAIRISDQYFDGIPWSALKNDRTLKAQFYRVVETEYPEYVCYPGGKLPIPVSVPYPTKKGEKKYFQGN*