Scaffold Ga0114364_1012607

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1012607
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3787
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F086598	Metagenome / Metatranscriptome	110	N
F090064	Metagenome	108	N
F102590	Metagenome	101	N
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_101260712	F086598	N/A	METEKSSVLKEQLEKTATMFKRISESVDRIEKTLKEHERKIDEALQRSSYQDDTDIDTWEGFGPKPERQPFNPNAETYTLELHHGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGQNG
Ga0114364_10126072	F103133	N/A	MRYKIQIQSANGWSDLRESANDGQTYETCLFPTRNAALAAREEFGELSEFLETTRIVTAETPETENIYA*
Ga0114364_10126074	F102590	GGAG	MKTHTPGPWRTTGLNVRAGDALICYAMNHHAHAETPEPEKMANARLISLAPQMLLALQRLAHPMADDEDLDYAREIIAKAKGQL*
Ga0114364_10126075	F090064	AGG	MKVYWTAYYGKFRKSEYTFQGRNAKRDAHRLVKRFGGRVVREIIKSHE*
Ga0114364_10126079	F001964	AGG	MSRNLFAPPKFKVQISGAIGWSDLKERVVRFETLEYATRKEAETTARELNPGEYTQGRIRVVPVEVPEDYDVYPTPERSNP*