Scaffold Ga0114364_1000216

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1000216
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34896
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (23.40%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F027487	Metagenome / Metatranscriptome	194	N
F048800	Metagenome / Metatranscriptome	147	Y
F056542	Metagenome / Metatranscriptome	137	Y
F081501	Metagenome	114	Y
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100021616	F081501	AGAAG	MNIDSSTPSYGTGFTGTIFSMFAVVVSMLPELDTWFRILASISAIIAAWVSIYVMISKLKKDKDK*
Ga0114364_100021624	F027487	N/A	MACFTALDYRNKSYPFVQTIADAAGITPVSYGCYDASSDAAKLYQFYVGLATIGGLTPVTENCFVQKTEDQQYYLTNEALSAALNPVT*
Ga0114364_100021631	F021128	AGG	MKLKNKNLAPVGGWYWKYEIKRDKLTFPAIVYGSTFNSLIQNIRKDYTSNGIEVPANIEQMVEDQTCQRQPSDRCWYSDGLGDKIAQAIHTVAATADKVLGTKLEHKARGCSSCNKRRNALNSLS*
Ga0114364_100021632	F023326	N/A	MSRAFSSNKGIRRYGIQFPEHMDDLGIELYCYSISRGEYGKEYCVKHNINISDFKLLSPHEHFINAVKLQWPTEVSIYNRGYTNTQLLRTLEELCNNTDICLAGAASMGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKCAAVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITAKVNLSANNDVTFIGIGNPSAGDNPHTRWAMPSGASNFDSVSPDMDKWETGTGVCLFYNGMRSPNFAAPASEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFTKVAGFDTAFTIGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVTLCRAAGVQPSKFGMDVSGDGGRVGQAIIREWLRFESSGASIALISSMGKPTDRLAAEVDKRPCKDVYDRLVSEYYYSCYHAFKSRVLFGVDPASDLARELCLRRYTIKNKKIAIETKDELKGRTGYSPDLSDSLIYALEMARRNGLVFIGNDKAVPTNRFWARDEKPVESFSDDDSYSSDDNGDW*
Ga0114364_10002165	F014513	GGA	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRAWTSQEEYVQICCVNDCFTLPARYEQIKLAWIGNESASLADEWFNATNAFALHADHSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEVEDIGVELMFEAQDQYDTYHKVKVATANPPTLAKSDLLVKGIRAVTKPITKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPKTCECITLYASKKYFDLADPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLSLAVQEQEKEMSNVEIPTAAPIRFANYSRADNLIGSDLLSPSPNDYFLSR*
Ga0114364_10002166	F056542	N/A	MTTLKGTDPKLVSGGAPTRGMIREGMGNMNPPNTGKNPYSSAPLPKSGKPVGQK*
Ga0114364_10002167	F048800	N/A	MDNQSSSPALTFPNVPDDFCPTGNWQNVFQVFIDEVLTNGTINVPGLGDVTPAQVAQINQELANQQNQISALDTRVDALEPAVKVRTGVITGVPTDDSIQTASFASNLLPDANYAVSITPICGSSISTSATPLFSLNSGSKTTAGFTIRVENNISQITSIEWMAVHTS*
Ga0114364_10002168	F101028	GGA	MAGAGQDQAIVNDILTGSFQGAYPYRATNLRTSDGILLSVSGIIYFLKMVNNRAFAYKVIEGNDPGMMHTFFVQAEDRAYIQNGYQNAIAWDGVLGTLTASEIQNGDFCEIISLGDGVTNTNFTLIGAPSNTVGVKFTAVITDTQRGTGTGTVKLPAYRLNPYLAKMPIGTIMEYAFGRVFVSDRFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPELGYNLRGQGQLVFLTGAGAFSMDVSLPRSQWNTSNIQRISLLGRGCTSPNLALVNSELWFRSHDGWAFYSNTQSEFNRYFSLRKLSRDVNKWVSNDTPWMKQFASTIFFDNYLINTVSPQTYRAEGVEGLNRFHRGMVVLDLDQSSTPAPDAQLSFRWNGVWTGIRPTQLLTALIQGEKRGFGFSFDKDNKNRLYEFTTTQGDDYGPNGTRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVDSYVDFRADSNPCWSQLKVPTTFGCDPCSPVVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWNYNIVN*