Scaffold Ga0114364_1000117

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1000117
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49545
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (18.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056551	Metagenome / Metatranscriptome	137	Y
F073459	Metagenome / Metatranscriptome	120	Y
F078626	Metagenome	116	Y
F103124	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100011723	F056551	N/A	MGLSTTNLATEGGSGLPKTIAPGNHTLKINSIVLEDFKFIDGAKHLVLNLETEAIDGFEGFLIDKDNPEAGHYAGQIGRVKASQYAFADGITKSGVKVERDKSLMIFLKNLTNSLGISEWFLAQDNEHDTIEEFVDAFNSTAPYKDKYLEFCIAGKEYEGKNGYTNYDMWLPKSVKGAYSIVPKGGEVLKFSETDHLRKLEVKPVESFGDDDLSIPSRAASDFDLD*
Ga0114364_100011754	F078626	N/A	MIMEKLKSRKDRFEYVGKLQDYQLSPGKKYAQYEQDTYTAYQNYLYKRALYGLNALTEDELTRTCSKKKQRINKVYLKGQEIINLYKQRLTIAYSNLLFKSLFPESPITDFLVNNNEVDGKFKNTLTFKDLNISKDDIISIFIQEGVLPKNFLSLTADPNQLPRLKGK*
Ga0114364_100011756	F073459	GGA	LTLEEYLELTELDIQYLISLDYGDSILNPFTSSAVEKTGTDKIYDFDYFAQDDEIINNIMSDDIPFDDIIDLTDPMDK*
Ga0114364_10001176	F103124	AGTAG	LIEAYLAGASNMYCGCYEMQSRADAKEWFENEYGRQDPEECDCCEEVED*