Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1107269 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 994 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002738 | Metagenome / Metatranscriptome | 533 | Y |
F043890 | Metagenome / Metatranscriptome | 155 | Y |
F045692 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114363_11072691 | F045692 | N/A | MTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCADLRSEKIDRIYYAMASHEDALERI |
Ga0114363_11072693 | F002738 | AGAAG | MSIDTYGLPSEQYEKFFEDNIRFAARLYLKTCNIISAEGAGSVDFKTVLDMYQETVYATNDDCRRYQKSNNPEALKETDLLGIYPSREELLAEIQSVNAKVEALADYLGELVKVTTKGLNGIAENLVD* |
Ga0114363_11072694 | F043890 | N/A | QKTSLWALSKPSSINKLHIECIDEDDGSMTIHITWDETDPDLDWWTNLGPEGQETFMIDALREACDCYVD* |
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