Scaffold Ga0114363_1107269

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1107269
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 994
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002738	Metagenome / Metatranscriptome	533	Y
F043890	Metagenome / Metatranscriptome	155	Y
F045692	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_11072691	F045692	N/A	MTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCADLRSEKIDRIYYAMASHEDALERI
Ga0114363_11072693	F002738	AGAAG	MSIDTYGLPSEQYEKFFEDNIRFAARLYLKTCNIISAEGAGSVDFKTVLDMYQETVYATNDDCRRYQKSNNPEALKETDLLGIYPSREELLAEIQSVNAKVEALADYLGELVKVTTKGLNGIAENLVD*
Ga0114363_11072694	F043890	N/A	QKTSLWALSKPSSINKLHIECIDEDDGSMTIHITWDETDPDLDWWTNLGPEGQETFMIDALREACDCYVD*