Scaffold Ga0114363_1055906

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1055906
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1552
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F024504	Metagenome	205	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10559062	F024504	AGGAG	MMDRPTVGITAPYRKSDYTYQDMLLDRIKDLEALVKKLEQRIHVLEKSN*
Ga0114363_10559063	F015570	GAG	MNDKLDQAFDLLEFDVTDQIRKSKYLAEQKEIACGVTDGTVQRALVRDLTENLRTLQTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS*
Ga0114363_10559065	F004231	AGGAG	MSVKPSDFKHEICVYLEGIGECLVCFDILSPGDELDADHSDDYEIDFSVFDEQDKHITYDISKKQYNHCENKAMDEMRDITTQWHKEWETCFD*