Scaffold Ga0114363_1045400

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1045400
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1774
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F029021	Metagenome	189	Y
F076901	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10454003	F006842	AGGAGG	MKATPVICGDHLVPISECDCTNYLQELKTSAERLVQLTREREEMK*
Ga0114363_10454004	F029021	GAGG	MKDLCQFCGWEIARVDWYHRYNGKLICDNCVMDTMSEREKENAR*
Ga0114363_10454008	F076901	GAG	MYIAPILKRRWKLMKLWVRNGLILLATLGLLTQGHHKLFPPTTVGRIPDGVIENRKATQDEKNHNRKIAKAYAQAGFGWSGRESECLLALWTSESRFDNY