Scaffold Ga0114363_1030946

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1030946
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2260
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031764	Metagenome / Metatranscriptome	181	Y
F034567	Metagenome / Metatranscriptome	174	Y
F058818	Metagenome / Metatranscriptome	134	N
F082590	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10309462	F031764	N/A	MTNKHIQSTICKVHANFSSLFSKEDVIKLLTELDTEIRNEDPKPKMDIDVLLTTFRQVLSEKVWDNVVNKDDVEMSIGYDNRVEIETVGIDEDFLISEAVDALEAVYNALDEEAN*
Ga0114363_10309463	F082590	AGG	MTERKRFSDTLTEDQYNKLTSATIRYQRKPDHPDEISSSINFNELHESVRGIVASLPVVEFPNSFFDYFLDGDQQFYLVTYKDKVFLVDTQGYDYARYVIQLKDLVVLEKEETQQMKAHPGMAEEIISMLKHMEVDGETMEHIIRSVGMEEQMLRQLIMTHTPYHQIEDLISERRQLDLPSSWKYGTITGEVDA*
Ga0114363_10309464	F034567	AGGAG	MPELFNYYDYVNHYGNRMFAVAGVNAMPARFSSILFTGSYEECMERMNPAGLEGSVEDVCQKVAFPK*
Ga0114363_10309465	F058818	N/A	MIKELLEKQELLGEIAAELYGDLWIMSEKFWGSPTERELREVAFKLIDLGYTAEPTPEQEEAAKVIAKKFGFELPPED*