Scaffold Ga0114363_1022168

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1022168
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2782
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F036096	Metagenome	170	Y
F069698	Metagenome	123	N
F079655	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10221681	F009003	N/A	MKAKEKAWQLYSNYFDIVENGKQEGNLVDAHMKAINAALYCVDEALTNAPNDIMQDFEGTGEYYSVKAYYHHVKNEILKLNEGKNIKVSRHAEAGTD*
Ga0114363_10221683	F079655	N/A	MEQQNKKETAIRTLSKSLRRRFQGASVNISWVELDAFMMKAQTREMTNLINSYNEGYTDCKAGLPNKAENESNSNV*
Ga0114363_10221684	F036096	AGCAG	MKATLTFDLTDDQHSFDCAINGKKYYDLVDEMRQHLRSLEKYQDLTEEQYQIVGKIREWLHSELLDAGIADKF*
Ga0114363_10221687	F069698	N/A	YIFCNTIEMEFESRDVITIIGAVVSLTGLYYALKRDVVKVSSALGKVESYHKREVTMLAESIRETKDEFNNKLNVMKDEQNKAIDKLEAKIDVIASQNMTISNNLAELAGYIRGTK*