Scaffold Ga0114363_1017242

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1017242
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4384
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010155	Metagenome / Metatranscriptome	307	Y
F011844	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10172426	F010155	AGG	MKDCANNVRTIYVNALNGNITYNGKNVPVYGQSPFKTPPQHYVVIGNIDEVANNTNHTFQNNVEVVIDIYSEQYRVYDNGVVDNIASQVLNILIPDTNIDGFSDTDFVVYPMSRTSSRYLPLQNGDNFVARKIITISNLVNQK*
Ga0114363_10172427	F011844	N/A	MGQIQGSTQDVLIDVTGGTSWVKLVCLRSSSVNTSMDATNEQTNCGVLTSVSEPLMSVDFDAICETDPASLSAISYEELLNAMVAKTLVNVKVQNPVSTGTSAGSVYYHQFKGYITDLTLNQ