Scaffold Ga0114363_1007712

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1007712
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19581
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (26.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F028175	Metagenome / Metatranscriptome	192	Y
F041764	Metagenome / Metatranscriptome	159	N
F082704	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100771221	F082704	N/A	MPESKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIEFSMKFYVPESKIKHSEQTSTK*
Ga0114363_100771224	F019140	N/A	MKQTPLYTSLKMTQEREREIVNSMATYFQQGKVLGDILLELSQRKDMNAKEKVYLALMIGSMMSKPNEQK*
Ga0114363_100771229	F012871	AGG	MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEAKSQQIKENEMAVNDDSWRRMLKEDIDSFKQGKYTTLELRGVSMMRWLEESKRITAETFTDEEYNLCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKESIQFEGFRELYKLYLSKQ*
Ga0114363_10077125	F028175	N/A	MAITIDDQPYEYTPIGQRLILVASSTNVANTGFRFVFDFGSFQVNVQPNAANKGVLDLAPIFRESLQHDASLLTTSADTENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVADGYKPNPNTRYALDGITKYLMSERTTDTHKWSEASSRGLSSDWVYIPTRLSDWGVVYAPSSSPLLVDNDFDIVIFSSYDNNDDLIDTQFLPLADNPSLVNVIGGYYANIDSWGGLDLTGAKYYTIQFGKETLFPVYTPASRLYCFYLVADDCKFDNVRLGWSNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGNYNASTFGFNTYDRGTTDRYVTTTKGLQINSDWVSVGEFNLLQTLCRSNDVFIINDDGTQTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL*
Ga0114363_10077129	F041764	GAGG	MNIEAGGFLKLELFNDDATLFLNALTKITNESGKMGFKTYGLSEDEMKTLNAILDSLG*