Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1006258 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6858 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (64.29%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004050 | Metagenome / Metatranscriptome | 455 | Y |
F004430 | Metagenome / Metatranscriptome | 438 | Y |
F013758 | Metagenome | 268 | Y |
F031078 | Metagenome / Metatranscriptome | 183 | Y |
F061604 | Metagenome | 131 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114363_100625811 | F061604 | N/A | MLEVPISDYQACLAMVEVKLARLQETPNHIDSYVDACAYLALACELSTEEDEGEYYA* |
Ga0114363_10062583 | F013758 | N/A | MTAWTPEYLVKINGTVVTDVTLANLTITSGRTDIYSQPVAGYCQVQLINFNNQSYPFNVGTGLTIEVKDSSDIFIPIFGGYITDYATAVNNAGALGSTTILTIVALGALSKLPKIIDPGVLSKDYDGDQIYTLLSGYLLGQWNEVPAAQTWATYNATETWENAVNIGLGSIDQPGDYEMIARNASSTDIYSLVSQIATSALGYIYEDAQGRIGYADSTHRQDYLATNGYVELDAGQALASGISTTVKSGDIRNKYTIAYGSNASSSYTAEDLQSQSLFGLQAQSFTSNIDKLSDAQLVADRYIALRSFPSAKFESITFPLGNPEIDDTDRDALLNVFMGMPVWIQNLPNNINDGSFQGYVEGWTFRASFNDLSLTFNASPINFSQVAVKWEQVNAAETWNTISSSLTWLDAIGVVA* |
Ga0114363_10062585 | F004430 | AGG | MATGVEVLSMLIPSGGWAISGDKYEDIKFIEAEPITKSEFEAGFKKVDAWKLEQEIGKANAKAALLERLGITEDEAKLLLS* |
Ga0114363_10062587 | F031078 | AGGTGG | MEAIIYATLGLIAIPVIRQIIKSYRAKKAVADIVVDALEAAVDTVEKKK* |
Ga0114363_10062589 | F004050 | GGAG | MARKKVIDLDTYNALDAYAISMHEFYKALRRAGFAVDLCLAIITDRDAYPDWLLPAIPDRVDRLPYEDDEDED* |
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