Scaffold Ga0114363_1005534

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1005534
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8996
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001731	Metagenome	644	Y
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100553414	F001731	N/A	MSIFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYTNLDIINLDQSNVAIGINDSVTIELQDSTDTFVPIFGGSVVDIAISVAEVGSVDYAQRINIIALGALARLPKALTDGVLSKEFDGDQIFDVLQAVLFDSWQEVPQALEWATYDPITQWQDAENSGLGEIDRPGNYELAARSSNRTDVYSLVSALATSGLGYIFEDAQGRIGYADSTHRTNYLAANGYVDLTANHALASGLSIQQRAGDVRNSITIKYNATSSAEESASDAASIALYGQLAQIISTTLHNSSDALDQANFYLGLRAYPRFNFNNITFELTNPEIDDADRDALINVFMGMPVNIANLPLNMNSGDFLGFVEGWTFSARYNQVSISMIVSPISFSLQAMRWNDVPVTEAWNTVNPTLDWINATIVA*
Ga0114363_10055345	F000903	N/A	MIDRIEEVQCMIAAISHCHDRSADHSSRIVRNLSWFEYVAQNAESMVSEWVVAKALGYEYTPGITWDKSKADVGQHIEVKWSSNPHSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWIPVAIAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPAI*
Ga0114363_10055346	F000403	GGAG	MSDFVEIIYPQEMKAKLMCNGEIIEEYKIEQCDKCSKLVRLDSFGYQKGYDHHEKVIWFCGDCR*
Ga0114363_10055347	F012452	AGGCGG	MAGFLENYEGNKERTDRWLRTFPNGRLEAHIIEFNAEKGYVLVQAKAWRNQEETEPAGIDYAFGYREAFNSNMKRWFCEDTTTSALMRVMALVMGGAEKATKETMEKVNAADVYDPWATKFGDVPSYKTAAEAEQAGIPSFGSSMDEIAKQLGGELVQEAPQCSHGHRIWKQSHDGSPKSWGGYFCTERTKATQCQPLWYVLRSTGKWEPQV*
Ga0114363_10055348	F009883	GGA	MNELSIVIFMIIAGAFWAVMSYAVGFKEGQRQGYTRGRAVSRHISQLNDKAAK*