Scaffold Ga0114363_1002782

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1002782
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9632
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023321	Metagenome / Metatranscriptome	210	Y
F047012	Metagenome / Metatranscriptome	150	Y
F055551	Metagenome	138	Y
F081259	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100278214	F023321	AGGA	MFLNQPQFPVFYTFNDLNRKAEEAAVKTIDFNKQFVDNTLAYFDSITDNQFTTYTKKMVTFNQNTAEDAKKILKSESTKTKAGN*
Ga0114363_100278215	F081259	AGGAGG	MLKKLIEWFTRPQISEIEQYISAHNPKTPADVDMLLNEFNYKRKLQCF*
Ga0114363_100278219	F047012	GGAG	MKRIFFIVVASLIAVAAHASESYRLPFVEIQNGTTKIPFIEQEWVLGSERADWLLYLEKGMLKDQKQPMYEFHAVTAYKKPSYNDVIKTEVSKIYTYGVLNCNEANLYILIEWYVDVNENVVFKSSHEFGTYVVEMLTPSSARNDIYNQICKETI*
Ga0114363_10027829	F055551	GAG	MITASNTKPWMSDEYDIPVLENEEVWSQRAIDETAVYLWLDIEREENVNKKEKN*