Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1001286 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15033 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (4.76%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F013299 | Metagenome / Metatranscriptome | 272 | Y |
F067724 | Metagenome | 125 | Y |
F090385 | Metagenome / Metatranscriptome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114363_100128622 | F090385 | N/A | MSAQTEMKVIDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAFQVAMDEWVK* |
Ga0114363_100128639 | F067724 | N/A | MKNYLEAILDLITLVWFGERVPGEPVKQPTFKTTVPDDQPSEYEWMQMFRVSSLHNVNQRIFFESK* |
Ga0114363_10012866 | F013299 | GGA | MLTGKKAPKRKEFIVMNSKLEYFSGLMYGGQLVWCSDYNEAKPLDDEAKFRTLQYMCWGEELLLDYIS* |
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