Scaffold Ga0114363_1000861

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1000861
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18639
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008073	Metagenome	339	Y
F020344	Metagenome / Metatranscriptome	224	N
F036704	Metagenome	169	Y
F047062	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100086115	F047062	N/A	MNYDTEHFYDQEITFTYEDQDYLWVGDYTIESYVNEESEYAPAFGDFEVKIDATHSLMSYEDGINFSPTPSLLMALELEIERNY*
Ga0114363_100086118	F036704	N/A	VLAKKYSSMWIEIDVMLAGSTMDWKELGLEVKHEFSKRMVRVKDVAYVQELVHDIQVIFFYDNTSCLIRGTYAEIRDELIHLTQDEDFD*
Ga0114363_100086119	F001775	AGG	MDREQTRIAAIFFFIGAVVAIILFPKRELETVYKTKIDRLTDTLYITSTDTIYIPKTKIKTKVLRDTVLLEYKPKISLFETTFPFEYGSTKVSGEVLGEVLKMTATNDYNLPVVTNTITETKTETIIKKSKGLYLGAGVNSLLQPSAKVSYLDNKYLFQYGYQPLEKIHTLSVSKKIF*
Ga0114363_100086129	F020344	N/A	MIAIPQGENTSIYVTLTDKRETSSNSYIFLFEHEVTKEDVTLTLTDISTFKDRVSKFAITSANFNNRTIGFWRYYVTQSGSGSQIIATGKMQLTAANLSTAGVVRYNGYNGDFKTYTTT*
Ga0114363_10008613	F008073	N/A	MKKTILTHLQKMEFVCGLKQFKEYKEEDAIELLNCLNKLFTSYGWMTEERVDYILHAGMRGQYGDFYHVNEKTVSVWINQYYNHHQSQIVQEVQAKNTQHREPTEEEIAQWIEIGKQIFRDNYQHAKESGFCRDLAEWGGNWFNKFQEKGILKPWLYQVDEIEKDVRRELRLTTRYIDEITVGAKSKNKIWKLFILESIKEKRNLDKLI*