Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1000425 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 44018 |
Total Scaffold Genes | 58 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (53.45%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004722 | Metagenome | 426 | Y |
F006785 | Metagenome / Metatranscriptome | 364 | Y |
F009141 | Metagenome / Metatranscriptome | 322 | Y |
F014614 | Metagenome / Metatranscriptome | 261 | Y |
F017122 | Metagenome / Metatranscriptome | 242 | Y |
F043896 | Metagenome / Metatranscriptome | 155 | Y |
F095168 | Metagenome | 105 | Y |
F100725 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114363_100042511 | F004722 | N/A | MSRPKTGRELVLEWLNREIRAARTADLQRAAAFLEWARDVRKGCAKQRGGARVAQANAWRKRVDEDVRW* |
Ga0114363_100042513 | F017122 | N/A | MEVTPFQEQQDPELRLGEGRSRTSAEKSELFELKIWLPGQGAMRDLVRAQSLQQAIEFAQNRYPKCKVEVPATAAKKPKLARAKNGPRETARRRLKLVEKKGESTNR* |
Ga0114363_100042514 | F043896 | GGAG | VSQPIADWARQSWGEVIVDQNRADLLDKLYFWDGRDKKDHPFHSTYTGLYRKYTAN* |
Ga0114363_10004252 | F014614 | N/A | MTDWYADYYRQSRGYNDNDLRELRSVPRKPSTEVPEVFKHRFADPAEYDAWVEERRRAYFG* |
Ga0114363_100042524 | F100725 | GGA | MSHRTESFVYSAEQVPIGGQPGDVLLKVQNANYYTAWRDFTYVFETYDVVLDDGEY* |
Ga0114363_10004253 | F009141 | N/A | MVPFYRSYLLGGKTVYLDKLSELSDSELNMLNIETMASLEEARRDYDAVENKQSEEGGSVYRRLKVAGYFQAAIKLELQN* |
Ga0114363_100042537 | F095168 | GAGG | MARDFKHLLNDLKEVVTSSARYAAVEIMNSLAEQGPAYSGQFSSAWYAVEPGQTPGGPRSAGNNIYKYDLRNVPKTKFRTGTYYEIVNGADYAPQALDLEEGRFQTQYDDAGNILEPLKTPVAVGTRTGPKRGQVSNGEGFAVSTAPLDWYVTYTNGGAMQRDLGNGVRIGFRQGPRGGTPSGTGFS* |
Ga0114363_100042553 | F006785 | N/A | MFTSQRDRKDAREAEREQLRLEKRHLRDLRWAVERSSIEATDWADLLALQAAHGKEGPLQLWRELVPYWRDCQRLNGGADIPAELFPQATGLFPRTPEPPKAPATRAKAAPGAPRKTRSDAGKAQPSRKVPA* |
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