Basic Information | |
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Taxon OID | 3300008265 Open in IMG/M |
Scaffold ID | Ga0114361_1029703 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1863 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Sarcoptiformes → Oribatida → Brachypylina → Oppioidea → Oppiidae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021479 | Metagenome / Metatranscriptome | 218 | Y |
F048104 | Metagenome / Metatranscriptome | 148 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114361_10297032 | F021479 | N/A | MDVTTDPLKMGMGGVPLMADAPSATIWGVIALPKRVVSVGVIDLIKYVAAQQVAPTCPKKMEFARHMVELEFATFMDVQAVVQGIYFSPECVIIITTTLLFALQSMRMQWWGK* |
Ga0114361_10297033 | F048104 | GAG | MVGEVIEASHDLTIMDINDLPFGIIQEYGGMNNWEHAITFAAVCKSWRIAAEPHLAMIGIAHMEGGCKRKLNVTGFLSYLDEQVKFRFAERIYVPCGLKTDMLFYSDVRLRCPQMTALIHDKWIKTDGNMEYVLEGVSRHACYRMYKHDTPNIPGVNAYIKYHWDKTMKVQLVSEGQFVQLFTNRRRNRIQTRFLRY* |
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