Scaffold Ga0114361_1020871

Overview

Basic Information

• Taxon OID: 3300008265
• Scaffold ID: Ga0114361_1020871
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2369
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025483	Metagenome / Metatranscriptome	201	Y
F040401	Metagenome / Metatranscriptome	162	Y
F058716	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114361_10208711	F040401	N/A	IPWEALCVDLIGPYTLKGKDGSSIDFMALTMIDPASSWFEVMELPTITRVTTKKVNGKERTIEEEILDKSSD*
Ga0114361_10208712	F025483	AGGA	MRTAELDMADSVYPADFDTFIDNAVWAIRSTYHTVLKASPGAAMFGRDMLFDIPFIADWHKIGNYRQRQTDRSNIRENNK*
Ga0114361_10208713	F058716	N/A	MSLVYAKKSDEIGCALCVFLHAAVACGTEILVCEGHQESCGCALYESLLTYVAHMDLVGDPLQGTCHTRASKILITKVRKIST*