Scaffold Ga0114361_1005285

Overview

Basic Information

• Taxon OID: 3300008265
• Scaffold ID: Ga0114361_1005285
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4980
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007402	Metagenome / Metatranscriptome	352	Y
F044913	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114361_10052851	F007402	N/A	MAPSHHVGKFLPKTKGFFPHDFTLIASVVGESVIGHGISGKDIPTMARLAKARRWSK*
Ga0114361_10052853	F044913	GGAGG	MYFHTFYFIQHFHLALSGSYLNGSDWTKSLISKLLHITHSQWIYRNFTLHDKLCEHLHNKSLEDIRLTIEELAETSPKDIPKESKFLLKINFGDLTKSHIENQQYWIIALQAAITVGRRSTAAGSRARRIRHRVNRKLPSRSKLGITAVERQIRRDCMHLAANEEMPFPHTEPSITTFLTKRPHPAAIFAQYRSNTNKCLCKPD*