Scaffold Ga0114349_1056781

Overview

Basic Information

• Taxon OID: 3300008263
• Scaffold ID: Ga0114349_1056781
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1865
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000331	Metagenome / Metatranscriptome	1285	Y
F007402	Metagenome / Metatranscriptome	352	Y
F023528	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114349_10567812	F000331	N/A	MTKNPQANTICERVHQVLGTMMRIAELDMADSVYPADIDTFIYNDNAVLAIRSIYHTVIKASPGAAIFGRDMLFDILFVADWHKIGDYRQRQTDRSNKCEHDRRVDYDYKVGDKVLIRKDGILRKTESIWKKEPWTITTVHTNETIRIQYGTKPERNNIRRVTPFSEELLI*
Ga0114349_10567813	F007402	N/A	VAPSYHVGKFLPKTKGLFPHDFTLIASVMGESVIGHGIGGKDIPIMVRLAKGQMLE*
Ga0114349_10567814	F023528	GAG	MCASRVSTHMRGLCTEILMSKGYQELCGYTLYESLLTYVAHVDPVGDPLLGTYHARASEILITKVRKIFYLGFCTIIL*