NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114349_1032195

Scaffold Ga0114349_1032195


Overview

Basic Information
Taxon OID3300008263 Open in IMG/M
Scaffold IDGa0114349_1032195 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2614
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047515Metagenome / Metatranscriptome149Y
F056607Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0114349_10321951F047515GAGMNYQELVSLVGGNNPQSATYEDIVSGIQSQYRPQTQFAPTTSLLDMIGSQLPDQPRIAYGSLLQALPRVLPTPMTPVKNTDAAASVDSGVINLGNLDTGKITGNTAIDNTLVYNNDFTKNTGGVNLDTSGVNTGLFGTKVTGTDIANVAGTVAPIAALAGNSDLVKTAIALNLIGSAADIKTEADVLNLGTKIAMLAAGPAGNVIAAGLGLASDNTPMTVNALLGLTNPTLNLVN
Ga0114349_10321952F056607GAGGMATAPVYYSDQLVKEFIDKEFAGKTGDALYQAVANEAVNRGVSAEQLGRVLGFDTSAVNQYATNIGKPLVAEAKVLDTVIDNAYNQQFGRDATEAEKANAKTYLTTGGNSLAGTGALNYSTEGYNYDTQSIISGYRSALGRNPTQTEYVSEMAKLGYDPFNASVLGTAKNLSANVAALESDPFAGRYANVNPYGTYDLSTMTTKLDSTLPNISKNVSGNVVQFINPVTQQPIVTSFVDGKLVVKEGVNTLTGEQAQAAINLALGTGALTGTEYKNLTGALANAKSMDDVYKAFGTPQAVAALDPNYGFQLGVGKTLEQAQANSTGVQALVDQIAAQNGGRLPANFSVGALAQANKVPFQFGQQVYDKAYTTDAGQRINTLAKTPTTPLNFNPANIYQAPIVAGQMRELFPAFGESKRLAQGLINERPTTQSIVNMIQGLPADNSFGLNTMQNNVVGAPTSLNNVLGLIAK*
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