Scaffold Ga0114349_1011115

Overview

Basic Information

• Taxon OID: 3300008263
• Scaffold ID: Ga0114349_1011115
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4518
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Odontellaceae → Pseudictyota → Pseudictyota dubia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001998	Metagenome / Metatranscriptome	606	Y
F002132	Metagenome / Metatranscriptome	590	Y
F071988	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114349_10111152	F001998	N/A	MVEAVEPFKLHPKSMPYIYKVFGHLKQLWMGIWQHTHTVTTTEVSPDLGVLAEIQDDVSVEMIPVRYG*
Ga0114349_10111153	F071988	N/A	MVEAVEPFKLHPTSMSYIYKVFGHLKQLWMGIWHHTHTVTTTEASPDLGEFTEIRQ*
Ga0114349_10111159	F002132	AGG	MLAKSYVLCCVSHNGNGDDHGVRRADRARAHAQWQNLLASHEATDALHQVACLAPYLPGGMVVAIAVKSITF*