Scaffold Ga0114337_1122530

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114337_1122530

Scaffold Ga0114337_1122530

Overview

Basic Information
Taxon OID	3300008262 Open in IMG/M
Scaffold ID	Ga0114337_1122530 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2510
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)		Depth (m)	4.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004816	Metagenome / Metatranscriptome	422	Y
F085150	Metagenome / Metatranscriptome	111	N
F086627	Metagenome / Metatranscriptome	110	Y
F102504	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114337_11225301	F004816	N/A	MKFIKYKQVARITLYGFDDLYRDNDSSIFTDDLKSEYYTTNLNAGVQVGKNAKRLRFQIKGLDNVKLSENARLCMESINVPMLYDGNNNDFKSLGLTIVRMSNLSSLNCFDSQGNGQTDPVIFTGQTQITQQKIGTISTNGSKQNFSPSPVFYNPYPEMLYNFPISSNFLNNRYIDLTITLQFTQGDFIELGNDQEYFDMFHISFIIY*
Ga0114337_11225302	F102504	N/A	MSNLSSINCFDSHGNGQTDPVIYTAQSHVSQQRLGDDTGHINFQNISSSPVFYNPYPEILYNFPISSNFLNNRYFDFTFIMQFLTGDFIELPNDQRYFDLFHISFIIYDLDEQELLLTSTQDVDFKKLGETLPRKINNVR*
Ga0114337_11225303	F086627	N/A	MKFIKYKQVARITLYGFDDLNRNNNSSVFTEPLNSFRFLNNTVGNNAKRMRFQIKGLDNVKMMTENQ*
Ga0114337_11225305	F085150	N/A	MISEQSLDGWDNKPVKFSNVKYPQTKDNNAPQNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEDQEIPQRIILICSTAHSDSNRVFKSLKNLNWDEDVIDEYNESLLQDKMHELKYDLDQAKEYKLYKTVYQKFKECKDIDELKDDEMLLLYKHDFKKFLKMVGHYLLIYVFVIDI*

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