Scaffold Ga0114337_1055325

Overview

Basic Information

• Taxon OID: 3300008262
• Scaffold ID: Ga0114337_1055325
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2050
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F005879	Metagenome / Metatranscriptome	387	Y
F028510	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114337_10553252	F005630	N/A	MNLYEVDGFYGTRNRGIIFVYETRSGKRWYCVEGSCNINCTYDEINEGCNVERLSDIDTMSSRDGIYSARELYDFVIN*
Ga0114337_10553253	F005879	N/A	MFNEQIFWKDGFEGECKGGIFTRAVDLKKFLELVEANENENGGEVVGLRFSDNNLEVIVNPKK*
Ga0114337_10553255	F028510	AGG	LKNFKKVKMGDVLKQRTYVCKCGATTKEIVWESLLSKTKVECSECSKVLTNKNLLVANKNEAVSIRTPTKNR*