Scaffold Ga0114336

Basic Information
Taxon OID	3300008261 Open in IMG/M
Scaffold ID	Ga0114336_1009205 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13721
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (27.27%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13721

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (27.27%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.236	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.236

Alt. (m)

Depth (m)

5.7

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F005633	Metagenome / Metatranscriptome	394	Y
F007260	Metagenome / Metatranscriptome	354	N
F009603	Metagenome / Metatranscriptome	315	N
F017997	Metagenome / Metatranscriptome	237	Y
F018171	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10092051	F018171	N/A	MANVQGKKYIYGSPATLALYSSTDGAAVLTGYVSPDMESYDLSHESDTEEVKNSAGEVVGHIAYNNRLTLTVNFVPASATSVDLAKLTAQLPDANGTCVISGAPVIVAGGYADAINAATGNRWIYAGGGSIKTTNTGKATGTITLKRYAGITATGSATVLGT*
Ga0114336_100920514	F005633	N/A	MRLATTIAVDKTGKSKLVSGPDISADLQRTNFNTASVPEGGKLVLWIQGALAPKVRKG*
Ga0114336_100920517	F009603	GAG	LSLLAALLAKLTTAAGSIETGNVVSQTSSADVSVTFSKPGEGAPSPSEMLEMWESLLSDYDYAVTLLAGDGISSPTDEQIYNKMLGSILVSTTRYYGDFTQFRREPTTRMS*
Ga0114336_10092054	F007260	N/A	VNLIATSLQLGMTVLQGALGNPAFIWQGQLVRCLSTTITDANAVIAGGFQDNVSTRLLVKLEDWRLADSTLVTVDATVWSMDAGCSPDRLLQENSSLLLQENTDRIILTFGKMMPVVGRTLIYDGRTLRIVSAKRDASGGFYILDLAAKTK*
Ga0114336_10092056	F017997	N/A	VNIIEQIVTALLKWLTGLAKTPPTAEDAKQDPELKAKLLDRIDRAGG*
Ga0114336_10092059	F002843	N/A	MIVPVNIVAVQVNQNNSLFVTTGVDYDNDGKVVGSEITAQYTLNPGDDLTGQPTEVVNIANALWTPAVVEAYKAANPVVEAVQPNE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114336_1009205

Overview

Ecosystem & Geography

Associated Families

Sequences