Scaffold Ga0114841_1029635

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114841_1029635

Scaffold Ga0114841_1029635

Overview

Basic Information
Taxon OID	3300008259 Open in IMG/M
Scaffold ID	Ga0114841_1029635 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2808
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005146	Metagenome / Metatranscriptome	410	Y
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_102963513	F005146	AGGAGG	MRNVNFYEVQDRKGDVAWGGASASEAVEWFRRGLDNSIYVSVWNEEDIEEPKLVIDKIDITKLVLTTIV
Ga0114841_10296357	F079999	GGAGG	MGDLFELSFRWQDGAAQVIIYALVIYLGLVIISKISDKRKR*

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