Scaffold Ga0114841

Basic Information
Taxon OID	3300008259 Open in IMG/M
Scaffold ID	Ga0114841_1019165 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0114841_1019165 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3595
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3595

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005740	Metagenome / Metatranscriptome	391	N
F012111	Metagenome	283	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_10191651	F012111	N/A	MSERAPRRYTDGSVTFDGGIDAGVMPSEVDKNQVAFAVNANFREGFISPRPGFVQKDYDLCVTVTADNAEITADQTNVTADGWSEECYGPQGLTGTFQCALPYISDDGRTFILLMISGKVWLYNCAQNNAQNLTTSPDLENPSNLLDGWMVQAENFVVIQDGFSKPLIFNGTSLRRAKDDEIKTGRVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFSVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAIDGIRSFIIARRSFSDWGNTPISGEMTPIVENDQSSLLWASSAVVFDNRVLMTSQPRFNSEGVIHKAISVLDMELVTSMRKKAPPAWAGIWTGLNILQLVKTENAYGDNCFAIARGSDDSIQIWEITKSEKFDMNLSEIPKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDRLEGDVSFNVTYRPDQYPGWIEWIDFAECATVTQCFDLCPITNFKPQYRPKMRFPTPSDAPCNATISTPARNLYEVQVMMNIIGYCRIKSLRVHAYDIQESSVGECRTVFPACTPLDVCDINPLTYTSE*
Ga0114841_10191653	F005740	GAG	MKLIVQDIRSTIARVIGVCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNSGDACVGKQLVDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGAWIDGEKLTLALPYVQSTKKFTQLTGVIREATNTASRLYEYDATALSELDLAVYDPDETLPQYRRSLLTDRCHNDEDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114841_1019165

Overview

Ecosystem & Geography

Associated Families

Sequences