NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114841_1005498

Scaffold Ga0114841_1005498


Overview

Basic Information
Taxon OID3300008259 Open in IMG/M
Scaffold IDGa0114841_1005498 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8461
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053809Metagenome / Metatranscriptome140N
F061552Metagenome / Metatranscriptome131N
F092936Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0114841_10054981F092936N/ALVIIAALKIQSHIPLAPGAFFTVENPAIVQKWMANGTLPLIFTAQSIKSVMHDKFTLYEIPPVPQSKSQHGFILSGVDITLLNIQVTNINCGGAMCDGLNMYQNSVTADRCPCNNVLDREGKVCLVLSLKVSDLKNKLQFCVHNHTSKSLTQLFMKRIPKGAVAATITGNQKHMGNLSTKVMDMLALGNEYNGFNISGWIKRGTIADSGVVQPPTGSKWDKPQQVDSGGLTYHLTKIAYATPPSDRILGE
Ga0114841_10054983F053809N/AVNYLSQLQLINRRRLHDFDVLSGKRHTRGAGAIRVAEIGAAYAEDRIRAHLGALIVDNNDLLAEWFRLKTYTDGHTPLICSNRPALQMNTMPFDTDGVCTIQGNGIPHPADMRSTIQIIERILLPHAQSAARCCTITDYRNHNAAYMCVKGFVRETKRSLDDVRGRLYYLQYDEIDLWRSVQNFEYNIEDSSTIIRELFANTQPTQPFPQVVTPTTNDVAHDARKSPNYLTR*
Ga0114841_10054985F061552N/AMVAINCHRRDFSVDPSSSSDTATCRYIATVKALTKMKDQEDMKRGVHITGTITMEETHYHSKCIHLETTLVNEKIMGFDCPILDISDSKMGRVGLAILVDMETTMVGNRIKKLVRKNMKCWTQPSIYAWPIVNSGLKIIDGVGLLILNDLAKSVYNFITTVQSEGNGTGSANRS*
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