Scaffold Ga0114841_1004299

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1004299
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7754
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010155	Metagenome / Metatranscriptome	307	Y
F011844	Metagenome / Metatranscriptome	286	Y
F079966	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_100429910	F079966	N/A	MAEVVTAQGLVLAFTNASGNVYPFACTKDATISITRDFLELAPRTNGVFREYLPNRSSFSISGSGLVKMVQSNLQPITFFDNFIEGSDAAFVGYLDMIDASGNYKVYEFDCIIQDLSLSSSIGQNSIYNFTLQGTGPLTEITTVDSYTVASGNITGRNPATFKLVAVGIEGTWYYNYTVTGTSPNFVISIGSSFNGKVVKAVYIAL*
Ga0114841_10042994	F010155	AGG	MKDCSNSVRSIYVSLLNGNISYNGKDVPVYGQDPFRTLPKNYIIISSISEQARNTNDSFDNIVSVDIDIYSEQYRVNDLSVVDNISSQILNILIPDTHVDGFSDTDFIIYPMSRTNSLYLPLQNGDNYVARKIITINNLVNQK*
Ga0114841_10042995	F011844	N/A	MAKIQGSTQSVDISLDNGSTWESLICLRTSSVNGTVDSTVEQTNCGTFTSIGKPNMTIDFDAICETAPTSEQVSYSALLTAFNAGTQIVARVQNPVVSGSSAGASYYHKFDGYVTSLTLNQSTTEFINFSGTISSNGAIDIDPA*